Loop J6_5J4B

3D structure

PDB id: 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 5J4B|1|1A|U|2098, 5J4B|1|1A|A|2400, 5J4B|1|1A|U|2402, 5J4B|1|1A|G|2440, 5J4B|1|1A|A|2442, 5J4B|1|1A|U|2443
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5J4B|1|1A|U|2096
5J4B|1|1A|U|2097
5J4B|1|1A|U|2098
5J4B|1|1A|A|2099
*
5J4B|1|1A|U|2255
5J4B|1|1A|U|2256
5J4B|1|1A|U|2257
5J4B|1|1A|G|2258
*
5J4B|1|1A|C|2270
5J4B|1|1A|G|2271
*
5J4B|1|1A|C|2293
5J4B|1|1A|G|2294
5J4B|1|1A|C|2295
5J4B|1|1A|C|2296
*
5J4B|1|1A|G|2396
5J4B|1|1A|C|2397
5J4B|1|1A|C|2398
5J4B|1|1A|U|2399
5J4B|1|1A|A|2400
5J4B|1|1A|G|2401
5J4B|1|1A|U|2402
5J4B|1|1A|G|2403
5J4B|1|1A|A|2404
5J4B|1|1A|A|2405
5J4B|1|1A|C|2406
5J4B|1|1A|C|2407
*
5J4B|1|1A|G|2433
5J4B|1|1A|A|2434
5J4B|1|1A|U|2435
5J4B|1|1A|C|2436
5J4B|1|1A|A|2437
5J4B|1|1A|A|2438
5J4B|1|1A|C|2439
5J4B|1|1A|G|2440
5J4B|1|1A|G|2441
5J4B|1|1A|A|2442
5J4B|1|1A|U|2443
5J4B|1|1A|A|2444
5J4B|1|1A|A|2445
5J4B|1|1A|A|2446
5J4B|1|1A|A|2447

Current chains

Chain 1A: 23S ribosomal RNA

Nearby chains

Chain 10: 50S ribosomal protein L27
Chain 11: 50S ribosomal protein L28
Chain 16: 50S ribosomal protein L33
Chain 18: 50S ribosomal protein L35
Chain 1D: 50S ribosomal protein L2
Chain 1P: 50S ribosomal protein L15
Chain 1y: Transfer RNA; tRNA

J6_5J4B_002