J6_5J4B_003

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5J4B|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2A|G|44
5J4B|1|2A|C|45
*
5J4B|1|2A|G|179
5J4B|1|2A|G|180
5J4B|1|2A|A|181
5J4B|1|2A|A|182
5J4B|1|2A|C|183
*
5J4B|1|2A|G|214
5J4B|1|2A|G|215
5J4B|1|2A|A|216
5J4B|1|2A|G|217
5J4B|1|2A|A|218
5J4B|1|2A|G|219
5J4B|1|2A|G|220
5J4B|1|2A|A|221
5J4B|1|2A|A|222
5J4B|1|2A|A|223
5J4B|1|2A|G|224
*
5J4B|1|2A|C|231
5J4B|1|2A|G|232
5J4B|1|2A|A|233
5J4B|1|2A|C|234
5J4B|1|2A|U|235
*
5J4B|1|2A|A|262
5J4B|1|2A|C|263
5J4B|1|2A|C|264
5J4B|1|2A|A|265
5J4B|1|2A|G|266
*
5J4B|1|2A|C|426
5J4B|1|2A|U|427
5J4B|1|2A|A|428
5J4B|1|2A|A|429
5J4B|1|2A|G|430
5J4B|1|2A|U|431
5J4B|1|2A|A|432
5J4B|1|2A|C|433

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34