J6_5J4B_004

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

5J4B|1|2A|U|2076, 5J4B|1|2A|A|2388, 5J4B|1|2A|U|2390, 5J4B|1|2A|G|2428, 5J4B|1|2A|A|2430, 5J4B|1|2A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2A|U|2074
5J4B|1|2A|U|2075
5J4B|1|2A|U|2076
5J4B|1|2A|A|2077
*
5J4B|1|2A|U|2243
5J4B|1|2A|U|2244
5J4B|1|2A|U|2245
5J4B|1|2A|G|2246
*
5J4B|1|2A|C|2258
5J4B|1|2A|G|2259
*
5J4B|1|2A|C|2281
5J4B|1|2A|G|2282
5J4B|1|2A|C|2283
5J4B|1|2A|C|2284
*
5J4B|1|2A|G|2384
5J4B|1|2A|C|2385
5J4B|1|2A|C|2386
5J4B|1|2A|U|2387
5J4B|1|2A|A|2388
5J4B|1|2A|G|2389
5J4B|1|2A|U|2390
5J4B|1|2A|G|2391
5J4B|1|2A|A|2392
5J4B|1|2A|A|2393
5J4B|1|2A|C|2394
5J4B|1|2A|C|2395
*
5J4B|1|2A|G|2421
5J4B|1|2A|A|2422
5J4B|1|2A|U|2423
5J4B|1|2A|C|2424
5J4B|1|2A|A|2425
5J4B|1|2A|A|2426
5J4B|1|2A|C|2427
5J4B|1|2A|G|2428
5J4B|1|2A|G|2429
5J4B|1|2A|A|2430
5J4B|1|2A|U|2431
5J4B|1|2A|A|2432
5J4B|1|2A|A|2433
5J4B|1|2A|A|2434
5J4B|1|2A|A|2435

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 21

50S ribosomal protein L28

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2D

50S ribosomal protein L2

Chain 2P

50S ribosomal protein L15

Chain 2y

Transfer RNA; tRNA