J6_5J4C_001

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5J4C|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4C|1|1A|G|44
5J4C|1|1A|C|45
*
5J4C|1|1A|G|168
5J4C|1|1A|G|169
5J4C|1|1A|A|170
5J4C|1|1A|A|171
5J4C|1|1A|C|172
*
5J4C|1|1A|G|203
5J4C|1|1A|G|204
5J4C|1|1A|A|205
5J4C|1|1A|G|206
5J4C|1|1A|A|207
5J4C|1|1A|G|208
5J4C|1|1A|G|209
5J4C|1|1A|A|210
5J4C|1|1A|A|211
5J4C|1|1A|A|212
5J4C|1|1A|G|213
*
5J4C|1|1A|C|220
5J4C|1|1A|G|221
5J4C|1|1A|A|222
5J4C|1|1A|C|223
5J4C|1|1A|U|224
*
5J4C|1|1A|A|251
5J4C|1|1A|C|252
5J4C|1|1A|C|253
5J4C|1|1A|A|254
5J4C|1|1A|G|255
*
5J4C|1|1A|C|453
5J4C|1|1A|U|454
5J4C|1|1A|A|455
5J4C|1|1A|A|456
5J4C|1|1A|G|457
5J4C|1|1A|U|458
5J4C|1|1A|A|459
5J4C|1|1A|C|460

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34