J6_5J4C_003

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5J4C|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4C|1|2A|G|44
5J4C|1|2A|C|45
*
5J4C|1|2A|G|179
5J4C|1|2A|G|180
5J4C|1|2A|A|181
5J4C|1|2A|A|182
5J4C|1|2A|C|183
*
5J4C|1|2A|G|214
5J4C|1|2A|G|215
5J4C|1|2A|A|216
5J4C|1|2A|G|217
5J4C|1|2A|A|218
5J4C|1|2A|G|219
5J4C|1|2A|G|220
5J4C|1|2A|A|221
5J4C|1|2A|A|222
5J4C|1|2A|A|223
5J4C|1|2A|G|224
*
5J4C|1|2A|C|231
5J4C|1|2A|G|232
5J4C|1|2A|A|233
5J4C|1|2A|C|234
5J4C|1|2A|U|235
*
5J4C|1|2A|A|262
5J4C|1|2A|C|263
5J4C|1|2A|C|264
5J4C|1|2A|A|265
5J4C|1|2A|G|266
*
5J4C|1|2A|C|426
5J4C|1|2A|U|427
5J4C|1|2A|A|428
5J4C|1|2A|A|429
5J4C|1|2A|G|430
5J4C|1|2A|U|431
5J4C|1|2A|A|432
5J4C|1|2A|C|433

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34