J6_5J4D_003

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5J4D|1|GB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|GB|G|45
5J4D|1|GB|C|46
*
5J4D|1|GB|G|179
5J4D|1|GB|G|180
5J4D|1|GB|A|181
5J4D|1|GB|A|182
5J4D|1|GB|C|183
*
5J4D|1|GB|G|214
5J4D|1|GB|G|215
5J4D|1|GB|A|216
5J4D|1|GB|G|217
5J4D|1|GB|A|218
5J4D|1|GB|G|219
5J4D|1|GB|G|220
5J4D|1|GB|A|221
5J4D|1|GB|A|222
5J4D|1|GB|A|223
5J4D|1|GB|G|224
*
5J4D|1|GB|C|231
5J4D|1|GB|G|232
5J4D|1|GB|A|233
5J4D|1|GB|C|234
5J4D|1|GB|U|235
*
5J4D|1|GB|A|262
5J4D|1|GB|C|263
5J4D|1|GB|C|264
5J4D|1|GB|A|265
5J4D|1|GB|G|266
*
5J4D|1|GB|C|426
5J4D|1|GB|U|427
5J4D|1|GB|A|428
5J4D|1|GB|A|429
5J4D|1|GB|G|430
5J4D|1|GB|U|431
5J4D|1|GB|A|432
5J4D|1|GB|C|433

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L34