J6_5J5B_001

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5J5B|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J5B|1|CA|G|45
5J5B|1|CA|G|46
*
5J5B|1|CA|C|179
5J5B|1|CA|G|180
5J5B|1|CA|A|181
5J5B|1|CA|A|182
5J5B|1|CA|C|183
*
5J5B|1|CA|G|214
5J5B|1|CA|G|215
5J5B|1|CA|A|216
5J5B|1|CA|A|217
5J5B|1|CA|A|218
5J5B|1|CA|A|219
5J5B|1|CA|G|220
5J5B|1|CA|A|221
5J5B|1|CA|A|222
5J5B|1|CA|A|223
5J5B|1|CA|U|224
*
5J5B|1|CA|A|231
5J5B|1|CA|G|232
5J5B|1|CA|A|233
5J5B|1|CA|U|234
5J5B|1|CA|U|235
*
5J5B|1|CA|A|262
5J5B|1|CA|G|263
5J5B|1|CA|C|264
5J5B|1|CA|A|265
5J5B|1|CA|G|266
*
5J5B|1|CA|C|426
5J5B|1|CA|U|427
5J5B|1|CA|A|428
5J5B|1|CA|A|429
5J5B|1|CA|A|430
5J5B|1|CA|U|431
5J5B|1|CA|A|432
5J5B|1|CA|C|433

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34