J6_5J88_003

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5J88|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|DA|G|45
5J88|1|DA|G|46
*
5J88|1|DA|C|179
5J88|1|DA|G|180
5J88|1|DA|A|181
5J88|1|DA|A|182
5J88|1|DA|C|183
*
5J88|1|DA|G|214
5J88|1|DA|G|215
5J88|1|DA|A|216
5J88|1|DA|A|217
5J88|1|DA|A|218
5J88|1|DA|A|219
5J88|1|DA|G|220
5J88|1|DA|A|221
5J88|1|DA|A|222
5J88|1|DA|A|223
5J88|1|DA|U|224
*
5J88|1|DA|A|231
5J88|1|DA|G|232
5J88|1|DA|A|233
5J88|1|DA|U|234
5J88|1|DA|U|235
*
5J88|1|DA|A|262
5J88|1|DA|G|263
5J88|1|DA|C|264
5J88|1|DA|A|265
5J88|1|DA|G|266
*
5J88|1|DA|C|426
5J88|1|DA|U|427
5J88|1|DA|A|428
5J88|1|DA|A|429
5J88|1|DA|A|430
5J88|1|DA|U|431
5J88|1|DA|A|432
5J88|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34