J6_5J8A_003

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5J8A|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8A|1|DA|G|45
5J8A|1|DA|G|46
*
5J8A|1|DA|C|179
5J8A|1|DA|G|180
5J8A|1|DA|A|181
5J8A|1|DA|A|182
5J8A|1|DA|C|183
*
5J8A|1|DA|G|214
5J8A|1|DA|G|215
5J8A|1|DA|A|216
5J8A|1|DA|A|217
5J8A|1|DA|A|218
5J8A|1|DA|A|219
5J8A|1|DA|G|220
5J8A|1|DA|A|221
5J8A|1|DA|A|222
5J8A|1|DA|A|223
5J8A|1|DA|U|224
*
5J8A|1|DA|A|231
5J8A|1|DA|G|232
5J8A|1|DA|A|233
5J8A|1|DA|U|234
5J8A|1|DA|U|235
*
5J8A|1|DA|A|262
5J8A|1|DA|G|263
5J8A|1|DA|C|264
5J8A|1|DA|A|265
5J8A|1|DA|G|266
*
5J8A|1|DA|C|426
5J8A|1|DA|U|427
5J8A|1|DA|A|428
5J8A|1|DA|A|429
5J8A|1|DA|A|430
5J8A|1|DA|U|431
5J8A|1|DA|A|432
5J8A|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34