J6_5J8A_004
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5J8A|1|DA|U|2076, 5J8A|1|DA|A|2388, 5J8A|1|DA|U|2390, 5J8A|1|DA|G|2428, 5J8A|1|DA|A|2430||A, 5J8A|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J8A|1|DA|U|2074
5J8A|1|DA|U|2075
5J8A|1|DA|U|2076
5J8A|1|DA|A|2077
*
5J8A|1|DA|U|2243
5J8A|1|DA|U|2244
5J8A|1|DA|U|2245
5J8A|1|DA|G|2246
*
5J8A|1|DA|C|2258
5J8A|1|DA|U|2259
*
5J8A|1|DA|A|2281
5J8A|1|DA|G|2282
5J8A|1|DA|C|2283
5J8A|1|DA|A|2284
*
5J8A|1|DA|U|2384
5J8A|1|DA|C|2385
5J8A|1|DA|A|2386
5J8A|1|DA|U|2387
5J8A|1|DA|A|2388
5J8A|1|DA|G|2389
5J8A|1|DA|U|2390
5J8A|1|DA|G|2391
5J8A|1|DA|A|2392
5J8A|1|DA|U|2393
5J8A|1|DA|C|2394
5J8A|1|DA|C|2395
*
5J8A|1|DA|G|2421
5J8A|1|DA|C|2422
5J8A|1|DA|U|2423
5J8A|1|DA|C|2424
5J8A|1|DA|A|2425
5J8A|1|DA|A|2426
5J8A|1|DA|C|2427
5J8A|1|DA|G|2428
5J8A|1|DA|G|2429||A
5J8A|1|DA|A|2430||A
5J8A|1|DA|U|2431
5J8A|1|DA|A|2432
5J8A|1|DA|A|2433
5J8A|1|DA|A|2434
5J8A|1|DA|A|2435
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L33
- Chain D4
- 50S ribosomal protein L35
- Chain DC
- 50S ribosomal protein L2
- Chain DM
- 50S ribosomal protein L15
- Chain DX
- 50S ribosomal protein L27
- Chain DY
- 50S ribosomal protein L28
Coloring options: