J6_5J91_001

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5J91|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J91|1|CA|G|45
5J91|1|CA|G|46
*
5J91|1|CA|C|179
5J91|1|CA|G|180
5J91|1|CA|A|181
5J91|1|CA|A|182
5J91|1|CA|C|183
*
5J91|1|CA|G|214
5J91|1|CA|G|215
5J91|1|CA|A|216
5J91|1|CA|A|217
5J91|1|CA|A|218
5J91|1|CA|A|219
5J91|1|CA|G|220
5J91|1|CA|A|221
5J91|1|CA|A|222
5J91|1|CA|A|223
5J91|1|CA|U|224
*
5J91|1|CA|A|231
5J91|1|CA|G|232
5J91|1|CA|A|233
5J91|1|CA|U|234
5J91|1|CA|U|235
*
5J91|1|CA|A|262
5J91|1|CA|G|263
5J91|1|CA|C|264
5J91|1|CA|A|265
5J91|1|CA|G|266
*
5J91|1|CA|C|426
5J91|1|CA|U|427
5J91|1|CA|A|428
5J91|1|CA|A|429
5J91|1|CA|A|430
5J91|1|CA|U|431
5J91|1|CA|A|432
5J91|1|CA|C|433

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34