J6_5JC9_001

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5JC9|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JC9|1|CA|G|45
5JC9|1|CA|G|46
*
5JC9|1|CA|C|179
5JC9|1|CA|G|180
5JC9|1|CA|A|181
5JC9|1|CA|A|182
5JC9|1|CA|C|183
*
5JC9|1|CA|G|214
5JC9|1|CA|G|215
5JC9|1|CA|A|216
5JC9|1|CA|A|217
5JC9|1|CA|A|218
5JC9|1|CA|A|219
5JC9|1|CA|G|220
5JC9|1|CA|A|221
5JC9|1|CA|A|222
5JC9|1|CA|A|223
5JC9|1|CA|U|224
*
5JC9|1|CA|A|231
5JC9|1|CA|G|232
5JC9|1|CA|A|233
5JC9|1|CA|U|234
5JC9|1|CA|U|235
*
5JC9|1|CA|A|262
5JC9|1|CA|G|263
5JC9|1|CA|C|264
5JC9|1|CA|A|265
5JC9|1|CA|G|266
*
5JC9|1|CA|C|426
5JC9|1|CA|U|427
5JC9|1|CA|A|428
5JC9|1|CA|A|429
5JC9|1|CA|A|430
5JC9|1|CA|U|431
5JC9|1|CA|A|432
5JC9|1|CA|C|433

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34