J6_5JTE_001

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

5JTE|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JTE|1|BA|G|45
5JTE|1|BA|G|46
*
5JTE|1|BA|C|179
5JTE|1|BA|G|180
5JTE|1|BA|A|181
5JTE|1|BA|A|182
5JTE|1|BA|C|183
5JTE|1|BA|C|184
*
5JTE|1|BA|G|212
5JTE|1|BA|A|213
5JTE|1|BA|G|214
5JTE|1|BA|G|215
5JTE|1|BA|A|216
5JTE|1|BA|A|217
5JTE|1|BA|A|218
5JTE|1|BA|A|219
5JTE|1|BA|G|220
5JTE|1|BA|A|221
5JTE|1|BA|A|222
5JTE|1|BA|A|223
5JTE|1|BA|U|224
*
5JTE|1|BA|A|231
5JTE|1|BA|G|232
5JTE|1|BA|A|233
5JTE|1|BA|U|234
5JTE|1|BA|U|235
*
5JTE|1|BA|A|262
5JTE|1|BA|G|263
5JTE|1|BA|C|264
5JTE|1|BA|A|265
5JTE|1|BA|G|266
*
5JTE|1|BA|C|426
5JTE|1|BA|U|427
5JTE|1|BA|A|428
5JTE|1|BA|A|429
5JTE|1|BA|A|430
5JTE|1|BA|U|431
5JTE|1|BA|A|432
5JTE|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34