J6_5JU8_001

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

5JU8|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JU8|1|BA|G|45
5JU8|1|BA|G|46
*
5JU8|1|BA|C|179
5JU8|1|BA|G|180
5JU8|1|BA|A|181
5JU8|1|BA|A|182
5JU8|1|BA|C|183
5JU8|1|BA|C|184
*
5JU8|1|BA|G|212
5JU8|1|BA|A|213
5JU8|1|BA|G|214
5JU8|1|BA|G|215
5JU8|1|BA|A|216
5JU8|1|BA|A|217
5JU8|1|BA|A|218
5JU8|1|BA|A|219
5JU8|1|BA|G|220
5JU8|1|BA|A|221
5JU8|1|BA|A|222
5JU8|1|BA|A|223
5JU8|1|BA|U|224
*
5JU8|1|BA|A|231
5JU8|1|BA|G|232
5JU8|1|BA|A|233
5JU8|1|BA|U|234
5JU8|1|BA|U|235
*
5JU8|1|BA|A|262
5JU8|1|BA|G|263
5JU8|1|BA|C|264
5JU8|1|BA|A|265
5JU8|1|BA|G|266
*
5JU8|1|BA|C|426
5JU8|1|BA|U|427
5JU8|1|BA|A|428
5JU8|1|BA|A|429
5JU8|1|BA|A|430
5JU8|1|BA|U|431
5JU8|1|BA|A|432
5JU8|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34