J6_5JU8_002
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5JU8|1|BA|U|2076, 5JU8|1|BA|A|2388, 5JU8|1|BA|U|2390, 5JU8|1|BA|G|2428, 5JU8|1|BA|A|2430, 5JU8|1|BA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JU8|1|BA|U|2074
5JU8|1|BA|U|2075
5JU8|1|BA|U|2076
5JU8|1|BA|A|2077
*
5JU8|1|BA|U|2243
5JU8|1|BA|U|2244
5JU8|1|BA|U|2245
5JU8|1|BA|G|2246
*
5JU8|1|BA|C|2258
5JU8|1|BA|U|2259
*
5JU8|1|BA|A|2281
5JU8|1|BA|G|2282
5JU8|1|BA|C|2283
5JU8|1|BA|A|2284
*
5JU8|1|BA|U|2384
5JU8|1|BA|C|2385
5JU8|1|BA|A|2386
5JU8|1|BA|U|2387
5JU8|1|BA|A|2388
5JU8|1|BA|G|2389
5JU8|1|BA|U|2390
5JU8|1|BA|G|2391
5JU8|1|BA|A|2392
5JU8|1|BA|U|2393
5JU8|1|BA|C|2394
5JU8|1|BA|C|2395
*
5JU8|1|BA|G|2421
5JU8|1|BA|C|2422
5JU8|1|BA|U|2423
5JU8|1|BA|C|2424
5JU8|1|BA|A|2425
5JU8|1|BA|A|2426
5JU8|1|BA|C|2427
5JU8|1|BA|G|2428
5JU8|1|BA|G|2429
5JU8|1|BA|A|2430
5JU8|1|BA|U|2431
5JU8|1|BA|A|2432
5JU8|1|BA|A|2433
5JU8|1|BA|A|2434
5JU8|1|BA|A|2435
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BC
- 50S ribosomal protein L2
- Chain BL
- 50S ribosomal protein L15
- Chain BW
- 50S ribosomal protein L27
- Chain BX
- 50S ribosomal protein L28
Coloring options: