J6_5JVH_001

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5JVH|1|X|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JVH|1|X|G|44
5JVH|1|X|C|45
*
5JVH|1|X|G|156
5JVH|1|X|G|157
5JVH|1|X|A|158
5JVH|1|X|A|159
5JVH|1|X|C|160
*
5JVH|1|X|G|191
5JVH|1|X|G|192
5JVH|1|X|A|193
5JVH|1|X|G|194
5JVH|1|X|A|195
5JVH|1|X|A|196
5JVH|1|X|G|197
5JVH|1|X|A|198
5JVH|1|X|A|199
5JVH|1|X|A|200
5JVH|1|X|G|201
*
5JVH|1|X|C|208
5JVH|1|X|G|209
5JVH|1|X|A|210
5JVH|1|X|U|211
5JVH|1|X|U|212
*
5JVH|1|X|A|239
5JVH|1|X|U|240
5JVH|1|X|C|241
5JVH|1|X|A|242
5JVH|1|X|G|243
*
5JVH|1|X|C|439
5JVH|1|X|U|440
5JVH|1|X|A|441
5JVH|1|X|A|442
5JVH|1|X|A|443
5JVH|1|X|U|444
5JVH|1|X|A|445
5JVH|1|X|C|446

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34