J6_5KCS_001

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

41 nucleotides

Bulged bases

5KCS|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1A|G|45
5KCS|1|1A|G|46
*
5KCS|1|1A|C|179
5KCS|1|1A|G|180
5KCS|1|1A|A|181
5KCS|1|1A|A|182
5KCS|1|1A|C|183
5KCS|1|1A|C|184
*
5KCS|1|1A|G|212
5KCS|1|1A|A|213
5KCS|1|1A|G|214
5KCS|1|1A|G|215
5KCS|1|1A|A|216
5KCS|1|1A|A|217
5KCS|1|1A|A|218
5KCS|1|1A|A|219
5KCS|1|1A|G|220
5KCS|1|1A|A|221
5KCS|1|1A|A|222
5KCS|1|1A|A|223
5KCS|1|1A|U|224
5KCS|1|1A|C|225
*
5KCS|1|1A|G|230
5KCS|1|1A|A|231
5KCS|1|1A|G|232
5KCS|1|1A|A|233
5KCS|1|1A|U|234
5KCS|1|1A|U|235
*
5KCS|1|1A|A|262
5KCS|1|1A|G|263
5KCS|1|1A|C|264
5KCS|1|1A|A|265
5KCS|1|1A|G|266
*
5KCS|1|1A|C|426
5KCS|1|1A|U|427
5KCS|1|1A|A|428
5KCS|1|1A|A|429
5KCS|1|1A|A|430
5KCS|1|1A|U|431
5KCS|1|1A|A|432
5KCS|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34