J6_5KCS_002
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUAC*GUUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 43 nucleotides
- Bulged bases
- 5KCS|1|1A|U|2076, 5KCS|1|1A|A|2388, 5KCS|1|1A|U|2390, 5KCS|1|1A|G|2428, 5KCS|1|1A|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1A|U|2074
5KCS|1|1A|U|2075
5KCS|1|1A|U|2076
5KCS|1|1A|A|2077
5KCS|1|1A|C|2078
*
5KCS|1|1A|G|2242
5KCS|1|1A|U|2243
5KCS|1|1A|U|2244
5KCS|1|1A|U|2245
5KCS|1|1A|G|2246
*
5KCS|1|1A|C|2258
5KCS|1|1A|U|2259
*
5KCS|1|1A|A|2281
5KCS|1|1A|G|2282
5KCS|1|1A|C|2283
5KCS|1|1A|A|2284
*
5KCS|1|1A|U|2384
5KCS|1|1A|C|2385
5KCS|1|1A|A|2386
5KCS|1|1A|U|2387
5KCS|1|1A|A|2388
5KCS|1|1A|G|2389
5KCS|1|1A|U|2390
5KCS|1|1A|G|2391
5KCS|1|1A|A|2392
5KCS|1|1A|U|2393
5KCS|1|1A|C|2394
5KCS|1|1A|C|2395
*
5KCS|1|1A|G|2421
5KCS|1|1A|C|2422
5KCS|1|1A|U|2423
5KCS|1|1A|C|2424
5KCS|1|1A|A|2425
5KCS|1|1A|A|2426
5KCS|1|1A|C|2427
5KCS|1|1A|G|2428
5KCS|1|1A|G|2429
5KCS|1|1A|A|2430
5KCS|1|1A|U|2431
5KCS|1|1A|A|2432
5KCS|1|1A|A|2433
5KCS|1|1A|A|2434
5KCS|1|1A|A|2435
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
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