J6_5KPV_001

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5KPV|1|27|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPV|1|27|G|45
5KPV|1|27|G|46
*
5KPV|1|27|C|179
5KPV|1|27|G|180
5KPV|1|27|A|181
5KPV|1|27|A|182
5KPV|1|27|C|183
*
5KPV|1|27|G|214
5KPV|1|27|G|215
5KPV|1|27|A|216
5KPV|1|27|A|217
5KPV|1|27|A|218
5KPV|1|27|A|219
5KPV|1|27|G|220
5KPV|1|27|A|221
5KPV|1|27|A|222
5KPV|1|27|A|223
5KPV|1|27|U|224
*
5KPV|1|27|A|231
5KPV|1|27|G|232
5KPV|1|27|A|233
5KPV|1|27|U|234
5KPV|1|27|U|235
*
5KPV|1|27|A|262
5KPV|1|27|G|263
5KPV|1|27|C|264
5KPV|1|27|A|265
5KPV|1|27|G|266
*
5KPV|1|27|C|426
5KPV|1|27|U|427
5KPV|1|27|A|428
5KPV|1|27|A|429
5KPV|1|27|A|430
5KPV|1|27|U|431
5KPV|1|27|A|432
5KPV|1|27|C|433

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34