J6_5LI0_001

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

5LI0|1|A|C|184, 5LI0|1|A|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|A|G|45
5LI0|1|A|C|46
*
5LI0|1|A|G|181
5LI0|1|A|C|182
5LI0|1|A|A|183
5LI0|1|A|C|184
5LI0|1|A|A|185
5LI0|1|A|C|186
*
5LI0|1|A|G|217
5LI0|1|A|G|218
5LI0|1|A|A|219
5LI0|1|A|A|220
5LI0|1|A|G|221
5LI0|1|A|A|222
5LI0|1|A|G|223
5LI0|1|A|A|224
5LI0|1|A|A|225
5LI0|1|A|A|226
5LI0|1|A|G|227
*
5LI0|1|A|C|234
5LI0|1|A|G|235
5LI0|1|A|A|236
5LI0|1|A|U|237
5LI0|1|A|U|238
*
5LI0|1|A|A|265
5LI0|1|A|A|266
5LI0|1|A|G|267
5LI0|1|A|A|268
5LI0|1|A|G|269
*
5LI0|1|A|C|472
5LI0|1|A|U|473
5LI0|1|A|A|474
5LI0|1|A|A|475
5LI0|1|A|A|476
5LI0|1|A|U|477
5LI0|1|A|A|478
5LI0|1|A|C|479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34