J6_5LZA_001

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5LZA|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZA|1|A|G|45
5LZA|1|A|G|46
*
5LZA|1|A|C|179
5LZA|1|A|G|180
5LZA|1|A|A|181
5LZA|1|A|A|182
5LZA|1|A|C|183
*
5LZA|1|A|G|214
5LZA|1|A|G|215
5LZA|1|A|A|216
5LZA|1|A|A|217
5LZA|1|A|A|218
5LZA|1|A|A|219
5LZA|1|A|G|220
5LZA|1|A|A|221
5LZA|1|A|A|222
5LZA|1|A|A|223
5LZA|1|A|U|224
*
5LZA|1|A|A|231
5LZA|1|A|G|232
5LZA|1|A|A|233
5LZA|1|A|U|234
5LZA|1|A|U|235
*
5LZA|1|A|A|262
5LZA|1|A|G|263
5LZA|1|A|C|264
5LZA|1|A|A|265
5LZA|1|A|G|266
*
5LZA|1|A|C|426
5LZA|1|A|U|427
5LZA|1|A|A|428
5LZA|1|A|A|429
5LZA|1|A|A|430
5LZA|1|A|U|431
5LZA|1|A|A|432
5LZA|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34