J6_5LZC_001

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5LZC|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZC|1|A|G|45
5LZC|1|A|G|46
*
5LZC|1|A|C|179
5LZC|1|A|G|180
5LZC|1|A|A|181
5LZC|1|A|A|182
5LZC|1|A|C|183
*
5LZC|1|A|G|214
5LZC|1|A|G|215
5LZC|1|A|A|216
5LZC|1|A|A|217
5LZC|1|A|A|218
5LZC|1|A|A|219
5LZC|1|A|G|220
5LZC|1|A|A|221
5LZC|1|A|A|222
5LZC|1|A|A|223
5LZC|1|A|U|224
*
5LZC|1|A|A|231
5LZC|1|A|G|232
5LZC|1|A|A|233
5LZC|1|A|U|234
5LZC|1|A|U|235
*
5LZC|1|A|A|262
5LZC|1|A|G|263
5LZC|1|A|C|264
5LZC|1|A|A|265
5LZC|1|A|G|266
*
5LZC|1|A|C|426
5LZC|1|A|U|427
5LZC|1|A|A|428
5LZC|1|A|A|429
5LZC|1|A|A|430
5LZC|1|A|U|431
5LZC|1|A|A|432
5LZC|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34