J6_5LZD_001

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5LZD|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZD|1|A|G|45
5LZD|1|A|G|46
*
5LZD|1|A|C|179
5LZD|1|A|G|180
5LZD|1|A|A|181
5LZD|1|A|A|182
5LZD|1|A|C|183
*
5LZD|1|A|G|214
5LZD|1|A|G|215
5LZD|1|A|A|216
5LZD|1|A|A|217
5LZD|1|A|A|218
5LZD|1|A|A|219
5LZD|1|A|G|220
5LZD|1|A|A|221
5LZD|1|A|A|222
5LZD|1|A|A|223
5LZD|1|A|U|224
*
5LZD|1|A|A|231
5LZD|1|A|G|232
5LZD|1|A|A|233
5LZD|1|A|U|234
5LZD|1|A|U|235
*
5LZD|1|A|A|262
5LZD|1|A|G|263
5LZD|1|A|C|264
5LZD|1|A|A|265
5LZD|1|A|G|266
*
5LZD|1|A|C|426
5LZD|1|A|U|427
5LZD|1|A|A|428
5LZD|1|A|A|429
5LZD|1|A|A|430
5LZD|1|A|U|431
5LZD|1|A|A|432
5LZD|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34