J6_5LZW_001
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 5LZW|1|5|A|66, 5LZW|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LZW|1|5|G|21
5LZW|1|5|G|22
5LZW|1|5|C|23
5LZW|1|5|G|24
5LZW|1|5|A|25
5LZW|1|5|C|26
*
5LZW|1|5|G|57
5LZW|1|5|G|58
5LZW|1|5|A|59
5LZW|1|5|A|60
5LZW|1|5|A|61
5LZW|1|5|A|62
5LZW|1|5|G|63
5LZW|1|5|A|64
5LZW|1|5|A|65
5LZW|1|5|A|66
5LZW|1|5|C|67
*
5LZW|1|5|G|74
5LZW|1|5|G|75
5LZW|1|5|A|76
5LZW|1|5|U|77
5LZW|1|5|U|78
*
5LZW|1|5|A|105
5LZW|1|5|A|106
5LZW|1|5|G|107
5LZW|1|5|A|108
5LZW|1|5|G|109
*
5LZW|1|5|C|332
5LZW|1|5|U|333
5LZW|1|5|A|334
5LZW|1|5|A|335
5LZW|1|5|A|336
5LZW|1|5|U|337
5LZW|1|5|A|338
5LZW|1|5|C|339
*
5LZW|1|8|G|33
5LZW|1|8|U|34
5LZW|1|8|C|35
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain h
- uL29
- Chain i
- eL36
- Chain j
- eL37
Coloring options: