J6_5LZX_003

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

5LZX|1|5|G|3922, 5LZX|1|5|A|4376, 5LZX|1|5|A|4378, 5LZX|1|5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZX|1|5|U|3920
5LZX|1|5|U|3921
5LZX|1|5|G|3922
5LZX|1|5|A|3923
*
5LZX|1|5|U|4188
5LZX|1|5|U|4189
5LZX|1|5|U|4190
5LZX|1|5|G|4191
*
5LZX|1|5|C|4204
5LZX|1|5|A|4205
*
5LZX|1|5|U|4227
5LZX|1|5|G|4228
5LZX|1|5|U|4229
5LZX|1|5|C|4230
*
5LZX|1|5|G|4331
5LZX|1|5|C|4332
5LZX|1|5|C|4333
5LZX|1|5|U|4334
5LZX|1|5|C|4335
5LZX|1|5|A|4336
5LZX|1|5|C|4337
5LZX|1|5|G|4338
5LZX|1|5|A|4339
5LZX|1|5|U|4340
5LZX|1|5|C|4341
5LZX|1|5|C|4342
*
5LZX|1|5|G|4370
5LZX|1|5|G|4371
5LZX|1|5|U|4372
5LZX|1|5|G|4373
5LZX|1|5|U|4374
5LZX|1|5|C|4375
5LZX|1|5|A|4376
5LZX|1|5|G|4377
5LZX|1|5|A|4378
5LZX|1|5|A|4379
5LZX|1|5|A|4380
5LZX|1|5|A|4381

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain N

Ribosomal protein L15

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain b

eL29

Chain o

eL42