J6_5MDY_001
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 5MDY|1|1|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MDY|1|1|G|45
5MDY|1|1|G|46
*
5MDY|1|1|C|179
5MDY|1|1|G|180
5MDY|1|1|A|181
5MDY|1|1|A|182
5MDY|1|1|C|183
*
5MDY|1|1|G|214
5MDY|1|1|G|215
5MDY|1|1|A|216
5MDY|1|1|A|217
5MDY|1|1|A|218
5MDY|1|1|A|219
5MDY|1|1|G|220
5MDY|1|1|A|221
5MDY|1|1|A|222
5MDY|1|1|A|223
5MDY|1|1|U|224
*
5MDY|1|1|A|231
5MDY|1|1|G|232
5MDY|1|1|A|233
5MDY|1|1|U|234
5MDY|1|1|U|235
*
5MDY|1|1|A|262
5MDY|1|1|G|263
5MDY|1|1|C|264
5MDY|1|1|A|265
5MDY|1|1|G|266
*
5MDY|1|1|C|426
5MDY|1|1|U|427
5MDY|1|1|A|428
5MDY|1|1|A|429
5MDY|1|1|A|430
5MDY|1|1|U|431
5MDY|1|1|A|432
5MDY|1|1|C|433
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
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