J6_5MGP_001

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5MGP|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MGP|1|A|G|45
5MGP|1|A|G|46
*
5MGP|1|A|C|179
5MGP|1|A|G|180
5MGP|1|A|A|181
5MGP|1|A|A|182
5MGP|1|A|C|183
*
5MGP|1|A|G|214
5MGP|1|A|G|215
5MGP|1|A|A|216
5MGP|1|A|A|217
5MGP|1|A|A|218
5MGP|1|A|A|219
5MGP|1|A|G|220
5MGP|1|A|A|221
5MGP|1|A|A|222
5MGP|1|A|A|223
5MGP|1|A|U|224
*
5MGP|1|A|A|231
5MGP|1|A|G|232
5MGP|1|A|A|233
5MGP|1|A|U|234
5MGP|1|A|U|235
*
5MGP|1|A|A|262
5MGP|1|A|G|263
5MGP|1|A|C|264
5MGP|1|A|A|265
5MGP|1|A|G|266
*
5MGP|1|A|C|426
5MGP|1|A|U|427
5MGP|1|A|A|428
5MGP|1|A|A|429
5MGP|1|A|A|430
5MGP|1|A|U|431
5MGP|1|A|A|432
5MGP|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34