J6_5MLC_001

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GACAAC*GGAAAAGAAAG*CGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

5MLC|1|A|A|45, 5MLC|1|A|A|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MLC|1|A|G|44
5MLC|1|A|A|45
5MLC|1|A|C|46
*
5MLC|1|A|G|163
5MLC|1|A|A|164
5MLC|1|A|C|165
5MLC|1|A|A|166
5MLC|1|A|A|167
5MLC|1|A|C|168
*
5MLC|1|A|G|199
5MLC|1|A|G|200
5MLC|1|A|A|201
5MLC|1|A|A|202
5MLC|1|A|A|203
5MLC|1|A|A|204
5MLC|1|A|G|205
5MLC|1|A|A|206
5MLC|1|A|A|207
5MLC|1|A|A|208
5MLC|1|A|G|209
*
5MLC|1|A|C|216
5MLC|1|A|G|217
5MLC|1|A|A|218
5MLC|1|A|U|219
5MLC|1|A|U|220
*
5MLC|1|A|A|247
5MLC|1|A|G|248
5MLC|1|A|C|249
5MLC|1|A|A|250
5MLC|1|A|G|251
*
5MLC|1|A|C|438
5MLC|1|A|U|439
5MLC|1|A|A|440
5MLC|1|A|A|441
5MLC|1|A|A|442
5MLC|1|A|U|443
5MLC|1|A|A|444
5MLC|1|A|C|445

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic