J6_5NCO_001

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5NCO|1|A|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NCO|1|A|G|45
5NCO|1|A|G|46
*
5NCO|1|A|C|179
5NCO|1|A|G|180
5NCO|1|A|A|181
5NCO|1|A|A|182
5NCO|1|A|C|183
*
5NCO|1|A|G|214
5NCO|1|A|G|215
5NCO|1|A|A|216
5NCO|1|A|A|217
5NCO|1|A|A|218
5NCO|1|A|A|219
5NCO|1|A|G|220
5NCO|1|A|A|221
5NCO|1|A|A|222
5NCO|1|A|A|223
5NCO|1|A|U|224
*
5NCO|1|A|A|231
5NCO|1|A|G|232
5NCO|1|A|A|233
5NCO|1|A|U|234
5NCO|1|A|U|235
*
5NCO|1|A|A|262
5NCO|1|A|G|263
5NCO|1|A|C|264
5NCO|1|A|A|265
5NCO|1|A|G|266
*
5NCO|1|A|C|426
5NCO|1|A|U|427
5NCO|1|A|A|428
5NCO|1|A|A|429
5NCO|1|A|A|430
5NCO|1|A|U|431
5NCO|1|A|A|432
5NCO|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34