J6_5ND8_001

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

5ND8|1|A|C|184, 5ND8|1|A|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|G|45
5ND8|1|A|C|46
*
5ND8|1|A|G|181
5ND8|1|A|C|182
5ND8|1|A|A|183
5ND8|1|A|C|184
5ND8|1|A|A|185
5ND8|1|A|C|186
*
5ND8|1|A|G|217
5ND8|1|A|G|218
5ND8|1|A|A|219
5ND8|1|A|A|220
5ND8|1|A|G|221
5ND8|1|A|A|222
5ND8|1|A|G|223
5ND8|1|A|A|224
5ND8|1|A|A|225
5ND8|1|A|A|226
5ND8|1|A|G|227
*
5ND8|1|A|C|234
5ND8|1|A|G|235
5ND8|1|A|A|236
5ND8|1|A|U|237
5ND8|1|A|U|238
*
5ND8|1|A|A|265
5ND8|1|A|A|266
5ND8|1|A|G|267
5ND8|1|A|A|268
5ND8|1|A|G|269
*
5ND8|1|A|C|472
5ND8|1|A|U|473
5ND8|1|A|A|474
5ND8|1|A|A|475
5ND8|1|A|A|476
5ND8|1|A|U|477
5ND8|1|A|A|478
5ND8|1|A|C|479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34