J6_5ND8_003
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5ND8|1|A|U|2103, 5ND8|1|A|U|2417, 5ND8|1|A|C|2449, 5ND8|1|A|G|2455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND8|1|A|U|2101
5ND8|1|A|U|2102
5ND8|1|A|U|2103
5ND8|1|A|A|2104
*
5ND8|1|A|U|2270
5ND8|1|A|U|2271
5ND8|1|A|U|2272
5ND8|1|A|G|2273
*
5ND8|1|A|C|2285
5ND8|1|A|G|2286
*
5ND8|1|A|C|2308
5ND8|1|A|G|2309
5ND8|1|A|C|2310
5ND8|1|A|U|2311
*
5ND8|1|A|A|2411
5ND8|1|A|C|2412
5ND8|1|A|U|2413
5ND8|1|A|U|2414
5ND8|1|A|A|2415
5ND8|1|A|G|2416
5ND8|1|A|U|2417
5ND8|1|A|G|2418
5ND8|1|A|A|2419
5ND8|1|A|U|2420
5ND8|1|A|C|2421
5ND8|1|A|C|2422
*
5ND8|1|A|G|2448
5ND8|1|A|C|2449
5ND8|1|A|U|2450
5ND8|1|A|C|2451
5ND8|1|A|A|2452
5ND8|1|A|A|2453
5ND8|1|A|C|2454
5ND8|1|A|G|2455
5ND8|1|A|G|2456
5ND8|1|A|A|2457
5ND8|1|A|U|2458
5ND8|1|A|A|2459
5ND8|1|A|A|2460
5ND8|1|A|A|2461
5ND8|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain 5
- 50S ribosomal protein L33 2
- Chain 7
- 50S ribosomal protein L35
- Chain D
- 50S ribosomal protein L2
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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