J6_5ND9_001

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

5ND9|1|A|C|184, 5ND9|1|A|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|G|45
5ND9|1|A|C|46
*
5ND9|1|A|G|181
5ND9|1|A|C|182
5ND9|1|A|A|183
5ND9|1|A|C|184
5ND9|1|A|A|185
5ND9|1|A|C|186
*
5ND9|1|A|G|217
5ND9|1|A|G|218
5ND9|1|A|A|219
5ND9|1|A|A|220
5ND9|1|A|G|221
5ND9|1|A|A|222
5ND9|1|A|G|223
5ND9|1|A|A|224
5ND9|1|A|A|225
5ND9|1|A|A|226
5ND9|1|A|G|227
*
5ND9|1|A|C|234
5ND9|1|A|G|235
5ND9|1|A|A|236
5ND9|1|A|U|237
5ND9|1|A|U|238
*
5ND9|1|A|A|265
5ND9|1|A|A|266
5ND9|1|A|G|267
5ND9|1|A|A|268
5ND9|1|A|G|269
*
5ND9|1|A|C|472
5ND9|1|A|U|473
5ND9|1|A|A|474
5ND9|1|A|A|475
5ND9|1|A|A|476
5ND9|1|A|U|477
5ND9|1|A|A|478
5ND9|1|A|C|479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34