J6_5ND9_002

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

5ND9|1|A|U|2103, 5ND9|1|A|C|2449, 5ND9|1|A|G|2455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|U|2101
5ND9|1|A|U|2102
5ND9|1|A|U|2103
5ND9|1|A|A|2104
*
5ND9|1|A|U|2270
5ND9|1|A|U|2271
5ND9|1|A|U|2272
5ND9|1|A|G|2273
*
5ND9|1|A|C|2285
5ND9|1|A|G|2286
*
5ND9|1|A|C|2308
5ND9|1|A|G|2309
5ND9|1|A|C|2310
5ND9|1|A|U|2311
*
5ND9|1|A|A|2411
5ND9|1|A|C|2412
5ND9|1|A|U|2413
5ND9|1|A|U|2414
5ND9|1|A|A|2415
5ND9|1|A|G|2416
5ND9|1|A|U|2417
5ND9|1|A|G|2418
5ND9|1|A|A|2419
5ND9|1|A|U|2420
5ND9|1|A|C|2421
5ND9|1|A|C|2422
*
5ND9|1|A|G|2448
5ND9|1|A|C|2449
5ND9|1|A|U|2450
5ND9|1|A|C|2451
5ND9|1|A|A|2452
5ND9|1|A|A|2453
5ND9|1|A|C|2454
5ND9|1|A|G|2455
5ND9|1|A|G|2456
5ND9|1|A|A|2457
5ND9|1|A|U|2458
5ND9|1|A|A|2459
5ND9|1|A|A|2460
5ND9|1|A|A|2461
5ND9|1|A|A|2462

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain 5

50S ribosomal protein L33 2

Chain 7

50S ribosomal protein L35

Chain D

50S ribosomal protein L2

Chain O

50S ribosomal protein L15

Chain Z

50S ribosomal protein L27