J6_5NDJ_001

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5NDJ|1|14|A|213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|G|44
5NDJ|1|14|C|45
*
5NDJ|1|14|G|169
5NDJ|1|14|G|170
5NDJ|1|14|A|171
5NDJ|1|14|A|172
5NDJ|1|14|C|173
*
5NDJ|1|14|G|204
5NDJ|1|14|G|205
5NDJ|1|14|A|206
5NDJ|1|14|G|207
5NDJ|1|14|A|208
5NDJ|1|14|G|209
5NDJ|1|14|G|210
5NDJ|1|14|A|211
5NDJ|1|14|A|212
5NDJ|1|14|A|213
5NDJ|1|14|G|214
*
5NDJ|1|14|C|221
5NDJ|1|14|G|222
5NDJ|1|14|A|223
5NDJ|1|14|C|224
5NDJ|1|14|U|225
*
5NDJ|1|14|A|252
5NDJ|1|14|C|253
5NDJ|1|14|C|254
5NDJ|1|14|A|255
5NDJ|1|14|G|256
*
5NDJ|1|14|C|455
5NDJ|1|14|U|456
5NDJ|1|14|A|457
5NDJ|1|14|A|458
5NDJ|1|14|G|459
5NDJ|1|14|U|460
5NDJ|1|14|A|461
5NDJ|1|14|C|462

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34