J6_5NG8_001

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCC*GGCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

5NG8|1|AA|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|G|45
5NG8|1|AA|C|46
5NG8|1|AA|C|47
*
5NG8|1|AA|G|180
5NG8|1|AA|G|181
5NG8|1|AA|C|182
5NG8|1|AA|A|183
5NG8|1|AA|C|184
5NG8|1|AA|A|185
5NG8|1|AA|C|186
*
5NG8|1|AA|G|217
5NG8|1|AA|G|218
5NG8|1|AA|A|219
5NG8|1|AA|A|220
5NG8|1|AA|G|221
5NG8|1|AA|A|222
5NG8|1|AA|G|223
5NG8|1|AA|A|224
5NG8|1|AA|A|225
5NG8|1|AA|A|226
5NG8|1|AA|G|227
*
5NG8|1|AA|C|234
5NG8|1|AA|G|235
5NG8|1|AA|A|236
5NG8|1|AA|U|237
5NG8|1|AA|U|238
*
5NG8|1|AA|A|265
5NG8|1|AA|A|266
5NG8|1|AA|G|267
5NG8|1|AA|A|268
5NG8|1|AA|G|269
*
5NG8|1|AA|C|472
5NG8|1|AA|U|473
5NG8|1|AA|A|474
5NG8|1|AA|A|475
5NG8|1|AA|A|476
5NG8|1|AA|U|477
5NG8|1|AA|A|478
5NG8|1|AA|C|479

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34