J6_5NWY_001

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5NWY|1|N|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NWY|1|N|G|45
5NWY|1|N|G|46
*
5NWY|1|N|C|179
5NWY|1|N|G|180
5NWY|1|N|A|181
5NWY|1|N|A|182
5NWY|1|N|C|183
*
5NWY|1|N|G|214
5NWY|1|N|G|215
5NWY|1|N|A|216
5NWY|1|N|A|217
5NWY|1|N|A|218
5NWY|1|N|A|219
5NWY|1|N|G|220
5NWY|1|N|A|221
5NWY|1|N|A|222
5NWY|1|N|A|223
5NWY|1|N|U|224
*
5NWY|1|N|A|231
5NWY|1|N|G|232
5NWY|1|N|A|233
5NWY|1|N|U|234
5NWY|1|N|U|235
*
5NWY|1|N|A|262
5NWY|1|N|G|263
5NWY|1|N|C|264
5NWY|1|N|A|265
5NWY|1|N|G|266
*
5NWY|1|N|C|426
5NWY|1|N|U|427
5NWY|1|N|A|428
5NWY|1|N|A|429
5NWY|1|N|A|430
5NWY|1|N|U|431
5NWY|1|N|A|432
5NWY|1|N|C|433

Current chains

Chain N

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L34