J6_5O2R_001

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5O2R|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|G|45
5O2R|1|A|G|46
*
5O2R|1|A|C|179
5O2R|1|A|G|180
5O2R|1|A|A|181
5O2R|1|A|A|182
5O2R|1|A|C|183
*
5O2R|1|A|G|214
5O2R|1|A|G|215
5O2R|1|A|A|216
5O2R|1|A|A|217
5O2R|1|A|A|218
5O2R|1|A|A|219
5O2R|1|A|G|220
5O2R|1|A|A|221
5O2R|1|A|A|222
5O2R|1|A|A|223
5O2R|1|A|U|224
*
5O2R|1|A|A|231
5O2R|1|A|G|232
5O2R|1|A|A|233
5O2R|1|A|U|234
5O2R|1|A|U|235
*
5O2R|1|A|A|262
5O2R|1|A|G|263
5O2R|1|A|C|264
5O2R|1|A|A|265
5O2R|1|A|G|266
*
5O2R|1|A|C|426
5O2R|1|A|U|427
5O2R|1|A|A|428
5O2R|1|A|A|429
5O2R|1|A|A|430
5O2R|1|A|U|431
5O2R|1|A|A|432
5O2R|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34