J6_5ON6_001

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

5ON6|1|1|A|67, 5ON6|1|1|U|329, 5ON6|1|4|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|1|G|22
5ON6|1|1|A|23
5ON6|1|1|G|24
5ON6|1|1|U|25
5ON6|1|1|A|26
5ON6|1|1|C|27
*
5ON6|1|1|G|58
5ON6|1|1|G|59
5ON6|1|1|A|60
5ON6|1|1|A|61
5ON6|1|1|A|62
5ON6|1|1|A|63
5ON6|1|1|G|64
5ON6|1|1|A|65
5ON6|1|1|A|66
5ON6|1|1|A|67
5ON6|1|1|C|68
*
5ON6|1|1|G|75
5ON6|1|1|G|76
5ON6|1|1|A|77
5ON6|1|1|U|78
5ON6|1|1|U|79
*
5ON6|1|1|A|106
5ON6|1|1|A|107
5ON6|1|1|A|108
5ON6|1|1|A|109
5ON6|1|1|G|110
*
5ON6|1|1|C|321
5ON6|1|1|U|322
5ON6|1|1|A|323
5ON6|1|1|A|324
5ON6|1|1|A|325
5ON6|1|1|U|326
5ON6|1|1|A|327
5ON6|1|1|U|328
5ON6|1|1|U|329
5ON6|1|1|G|330
5ON6|1|1|G|331
*
5ON6|1|4|C|32
5ON6|1|4|A|33
5ON6|1|4|U|34
5ON6|1|4|C|35

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L35-A

Chain AJ

60S ribosomal protein L36-A

Chain AK

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L4-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A