Loop J6_5ON6

3D structure

PDB id: 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of haemanthamine bound to the 80S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 5ON6|1|AR|A|67, 5ON6|1|AR|U|329, 5ON6|1|AT|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5ON6|1|AR|G|22
5ON6|1|AR|A|23
5ON6|1|AR|G|24
5ON6|1|AR|U|25
5ON6|1|AR|A|26
5ON6|1|AR|C|27
*
5ON6|1|AR|G|58
5ON6|1|AR|G|59
5ON6|1|AR|A|60
5ON6|1|AR|A|61
5ON6|1|AR|A|62
5ON6|1|AR|A|63
5ON6|1|AR|G|64
5ON6|1|AR|A|65
5ON6|1|AR|A|66
5ON6|1|AR|A|67
5ON6|1|AR|C|68
*
5ON6|1|AR|G|75
5ON6|1|AR|G|76
5ON6|1|AR|A|77
5ON6|1|AR|U|78
5ON6|1|AR|U|79
*
5ON6|1|AR|A|106
5ON6|1|AR|A|107
5ON6|1|AR|A|108
5ON6|1|AR|A|109
5ON6|1|AR|G|110
*
5ON6|1|AR|C|321
5ON6|1|AR|U|322
5ON6|1|AR|A|323
5ON6|1|AR|A|324
5ON6|1|AR|A|325
5ON6|1|AR|U|326
5ON6|1|AR|A|327
5ON6|1|AR|U|328
5ON6|1|AR|U|329
5ON6|1|AR|G|330
5ON6|1|AR|G|331
*
5ON6|1|AT|C|32
5ON6|1|AT|A|33
5ON6|1|AT|U|34
5ON6|1|AT|C|35

Current chains

Chain AR: 25S ribosomal RNA
Chain AT: 5.8S ribosomal RNA

Nearby chains

Chain CF: 60S ribosomal protein L4-A
Chain CN: 60S ribosomal protein L13-A
Chain CP: 60S ribosomal protein L15-A
Chain DJ: 60S ribosomal protein L35-A
Chain DK: 60S ribosomal protein L36-A
Chain DL: 60S ribosomal protein L37-A

J6_5ON6_003