J6_5OPT_001

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAAAUCU*ACAUU*AUGAACCAACCG*CAG*CGAAAG*CGUCU

Length

38 nucleotides

Bulged bases

5OPT|1|E|C|127, 5OPT|1|E|C|143, 5OPT|1|E|U|145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|A|122
5OPT|1|E|A|123
5OPT|1|E|A|124
5OPT|1|E|A|125
5OPT|1|E|U|126
5OPT|1|E|C|127
5OPT|1|E|U|128
*
5OPT|1|E|A|142
5OPT|1|E|C|143
5OPT|1|E|A|144
5OPT|1|E|U|145
5OPT|1|E|U|146
*
5OPT|1|E|A|177
5OPT|1|E|U|178
5OPT|1|E|G|179
5OPT|1|E|A|180
5OPT|1|E|A|181
5OPT|1|E|C|182
5OPT|1|E|C|183
5OPT|1|E|A|184
5OPT|1|E|A|185
5OPT|1|E|C|186
5OPT|1|E|C|187
5OPT|1|E|G|188
*
5OPT|1|E|C|236
5OPT|1|E|A|237
5OPT|1|E|G|238
*
5OPT|1|E|C|312
5OPT|1|E|G|313
5OPT|1|E|A|314
5OPT|1|E|A|315
5OPT|1|E|A|316
5OPT|1|E|G|317
*
5OPT|1|E|C|336
5OPT|1|E|G|337
5OPT|1|E|U|338
5OPT|1|E|C|339
5OPT|1|E|U|340

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain P

40S ribosomal protein S6

Chain Z

40S ribosomal protein S8