J6_5T62_002
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 5T62|1|A|G|2418, 5T62|1|A|C|2760, 5T62|1|A|A|2799, 5T62|1|A|A|2801, 5T62|1|A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T62|1|A|U|2416
5T62|1|A|U|2417
5T62|1|A|G|2418
5T62|1|A|A|2419
*
5T62|1|A|U|2611
5T62|1|A|U|2612
5T62|1|A|U|2613
5T62|1|A|G|2614
*
5T62|1|A|C|2627
5T62|1|A|A|2628
*
5T62|1|A|U|2650
5T62|1|A|G|2651
5T62|1|A|U|2652
5T62|1|A|C|2653
*
5T62|1|A|G|2754
5T62|1|A|C|2755
5T62|1|A|C|2756
5T62|1|A|U|2757
5T62|1|A|A|2758
5T62|1|A|U|2759
5T62|1|A|C|2760
5T62|1|A|G|2761
5T62|1|A|A|2762
5T62|1|A|U|2763
5T62|1|A|C|2764
5T62|1|A|C|2765
*
5T62|1|A|G|2793
5T62|1|A|G|2794
5T62|1|A|U|2795
5T62|1|A|G|2796
5T62|1|A|C|2797
5T62|1|A|C|2798
5T62|1|A|A|2799
5T62|1|A|G|2800
5T62|1|A|A|2801
5T62|1|A|A|2802
5T62|1|A|A|2803
5T62|1|A|A|2804
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain Q
- 60S ribosomal protein L42-A
- Chain V
- 60S ribosomal export protein NMD3
- Chain a
- 60S ribosomal protein L15-A
- Chain d
- 60S ribosomal protein L18-A
- Chain g
- 60S ribosomal protein L21-A
- Chain n
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L29
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