J6_5T6R_001
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5T6R|1|A|A|67, 5T6R|1|A|U|329, 5T6R|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T6R|1|A|G|22
5T6R|1|A|A|23
5T6R|1|A|G|24
5T6R|1|A|U|25
5T6R|1|A|A|26
5T6R|1|A|C|27
*
5T6R|1|A|G|58
5T6R|1|A|G|59
5T6R|1|A|A|60
5T6R|1|A|A|61
5T6R|1|A|A|62
5T6R|1|A|A|63
5T6R|1|A|G|64
5T6R|1|A|A|65
5T6R|1|A|A|66
5T6R|1|A|A|67
5T6R|1|A|C|68
*
5T6R|1|A|G|75
5T6R|1|A|G|76
5T6R|1|A|A|77
5T6R|1|A|U|78
5T6R|1|A|U|79
*
5T6R|1|A|A|106
5T6R|1|A|A|107
5T6R|1|A|A|108
5T6R|1|A|A|109
5T6R|1|A|G|110
*
5T6R|1|A|C|321
5T6R|1|A|U|322
5T6R|1|A|A|323
5T6R|1|A|A|324
5T6R|1|A|A|325
5T6R|1|A|U|326
5T6R|1|A|A|327
5T6R|1|A|U|328
5T6R|1|A|U|329
5T6R|1|A|G|330
5T6R|1|A|G|331
*
5T6R|1|C|C|32
5T6R|1|C|A|33
5T6R|1|C|U|34
5T6R|1|C|C|35
Current chains
- Chain A
- 25S Ribosomal RNA
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain u
- 60S ribosomal protein L35-A
- Chain v
- 60S ribosomal protein L36-A
- Chain w
- 60S ribosomal protein L37-A
Coloring options: