J6_5TBW_001
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5TBW|1|1|A|67, 5TBW|1|1|U|329, 5TBW|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J6_89220.1
- Basepair signature
- cWW-cSS-cWW-cSS-tHW-F-F-F-F-F-cSS-cWW-cSS-tHW-cWW-tHS-cWW-cWW-tWW-tWW-cWW-F-F-F-tSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5TBW|1|1|G|22
5TBW|1|1|A|23
5TBW|1|1|G|24
5TBW|1|1|U|25
5TBW|1|1|A|26
5TBW|1|1|C|27
*
5TBW|1|1|G|58
5TBW|1|1|G|59
5TBW|1|1|A|60
5TBW|1|1|A|61
5TBW|1|1|A|62
5TBW|1|1|A|63
5TBW|1|1|G|64
5TBW|1|1|A|65
5TBW|1|1|A|66
5TBW|1|1|A|67
5TBW|1|1|C|68
*
5TBW|1|1|G|75
5TBW|1|1|G|76
5TBW|1|1|A|77
5TBW|1|1|U|78
5TBW|1|1|U|79
*
5TBW|1|1|A|106
5TBW|1|1|A|107
5TBW|1|1|A|108
5TBW|1|1|A|109
5TBW|1|1|G|110
*
5TBW|1|1|C|321
5TBW|1|1|U|322
5TBW|1|1|A|323
5TBW|1|1|A|324
5TBW|1|1|A|325
5TBW|1|1|U|326
5TBW|1|1|A|327
5TBW|1|1|U|328
5TBW|1|1|U|329
5TBW|1|1|G|330
5TBW|1|1|G|331
*
5TBW|1|4|C|32
5TBW|1|4|A|33
5TBW|1|4|U|34
5TBW|1|4|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain AI
- 60S ribosomal protein L35-A
- Chain AJ
- 60S ribosomal protein L36-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L4-A
- Chain t
- 60S ribosomal protein L13-A
- Chain v
- 60S ribosomal protein L15-A
Coloring options: