J6_5TGA_003
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5TGA|1|5|A|67, 5TGA|1|5|U|329, 5TGA|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5TGA|1|5|G|22
5TGA|1|5|A|23
5TGA|1|5|G|24
5TGA|1|5|U|25
5TGA|1|5|A|26
5TGA|1|5|C|27
*
5TGA|1|5|G|58
5TGA|1|5|G|59
5TGA|1|5|A|60
5TGA|1|5|A|61
5TGA|1|5|A|62
5TGA|1|5|A|63
5TGA|1|5|G|64
5TGA|1|5|A|65
5TGA|1|5|A|66
5TGA|1|5|A|67
5TGA|1|5|C|68
*
5TGA|1|5|G|75
5TGA|1|5|G|76
5TGA|1|5|A|77
5TGA|1|5|U|78
5TGA|1|5|U|79
*
5TGA|1|5|A|106
5TGA|1|5|A|107
5TGA|1|5|A|108
5TGA|1|5|A|109
5TGA|1|5|G|110
*
5TGA|1|5|C|321
5TGA|1|5|U|322
5TGA|1|5|A|323
5TGA|1|5|A|324
5TGA|1|5|A|325
5TGA|1|5|U|326
5TGA|1|5|A|327
5TGA|1|5|U|328
5TGA|1|5|U|329
5TGA|1|5|G|330
5TGA|1|5|G|331
*
5TGA|1|8|C|32
5TGA|1|8|A|33
5TGA|1|8|U|34
5TGA|1|8|C|35
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o6
- 60S ribosomal protein L36-A
- Chain o7
- 60S ribosomal protein L37-A
Coloring options: