J6_5U9F_002

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

5U9F|1|01|U|2076, 5U9F|1|01|G|2428, 5U9F|1|01|A|2430, 5U9F|1|01|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U9F|1|01|U|2074
5U9F|1|01|U|2075
5U9F|1|01|U|2076
5U9F|1|01|A|2077
*
5U9F|1|01|U|2243
5U9F|1|01|U|2244
5U9F|1|01|U|2245
5U9F|1|01|G|2246
*
5U9F|1|01|C|2258
5U9F|1|01|U|2259
*
5U9F|1|01|A|2281
5U9F|1|01|G|2282
5U9F|1|01|C|2283
5U9F|1|01|A|2284
*
5U9F|1|01|U|2384
5U9F|1|01|C|2385
5U9F|1|01|A|2386
5U9F|1|01|U|2387
5U9F|1|01|A|2388
5U9F|1|01|G|2389
5U9F|1|01|U|2390
5U9F|1|01|G|2391
5U9F|1|01|A|2392
5U9F|1|01|U|2393
5U9F|1|01|C|2394
5U9F|1|01|C|2395
*
5U9F|1|01|G|2421
5U9F|1|01|C|2422
5U9F|1|01|U|2423
5U9F|1|01|C|2424
5U9F|1|01|A|2425
5U9F|1|01|A|2426
5U9F|1|01|C|2427
5U9F|1|01|G|2428
5U9F|1|01|G|2429
5U9F|1|01|A|2430
5U9F|1|01|U|2431
5U9F|1|01|A|2432
5U9F|1|01|A|2433
5U9F|1|01|A|2434
5U9F|1|01|A|2435

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 14

50S ribosomal protein L15

Chain 25

50S ribosomal protein L27

Chain 26

50S ribosomal protein L28

Chain 31

50S ribosomal protein L33

Chain 33

50S ribosomal protein L35

Chain X

Transfer RNA; tRNA