J6_5UQ7_001

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5UQ7|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ7|1|A|G|44
5UQ7|1|A|C|45
*
5UQ7|1|A|G|179
5UQ7|1|A|G|180
5UQ7|1|A|A|181
5UQ7|1|A|A|182
5UQ7|1|A|C|183
*
5UQ7|1|A|G|214
5UQ7|1|A|G|215
5UQ7|1|A|A|216
5UQ7|1|A|G|217
5UQ7|1|A|A|218
5UQ7|1|A|G|219
5UQ7|1|A|G|220
5UQ7|1|A|A|221
5UQ7|1|A|A|222
5UQ7|1|A|A|223
5UQ7|1|A|G|224
*
5UQ7|1|A|C|231
5UQ7|1|A|G|232
5UQ7|1|A|A|233
5UQ7|1|A|C|234
5UQ7|1|A|U|235
*
5UQ7|1|A|A|262
5UQ7|1|A|C|263
5UQ7|1|A|C|264
5UQ7|1|A|A|265
5UQ7|1|A|G|266
*
5UQ7|1|A|C|426
5UQ7|1|A|U|427
5UQ7|1|A|A|428
5UQ7|1|A|A|429
5UQ7|1|A|G|430
5UQ7|1|A|U|431
5UQ7|1|A|A|432
5UQ7|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34