3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
5UYK|1|01|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5UYK|1|01|G|45
5UYK|1|01|G|46
*
5UYK|1|01|C|179
5UYK|1|01|G|180
5UYK|1|01|A|181
5UYK|1|01|A|182
5UYK|1|01|C|183
*
5UYK|1|01|G|214
5UYK|1|01|G|215
5UYK|1|01|A|216
5UYK|1|01|A|217
5UYK|1|01|A|218
5UYK|1|01|A|219
5UYK|1|01|G|220
5UYK|1|01|A|221
5UYK|1|01|A|222
5UYK|1|01|A|223
5UYK|1|01|U|224
*
5UYK|1|01|A|231
5UYK|1|01|G|232
5UYK|1|01|A|233
5UYK|1|01|U|234
5UYK|1|01|U|235
*
5UYK|1|01|A|262
5UYK|1|01|G|263
5UYK|1|01|C|264
5UYK|1|01|A|265
5UYK|1|01|G|266
*
5UYK|1|01|C|426
5UYK|1|01|U|427
5UYK|1|01|A|428
5UYK|1|01|A|429
5UYK|1|01|A|430
5UYK|1|01|U|431
5UYK|1|01|A|432
5UYK|1|01|C|433

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 32
50S ribosomal protein L34

Coloring options:

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