J6_5V8I_001

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5V8I|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|1A|G|44
5V8I|1|1A|C|45
*
5V8I|1|1A|G|179
5V8I|1|1A|G|180
5V8I|1|1A|A|181
5V8I|1|1A|A|182
5V8I|1|1A|C|183
*
5V8I|1|1A|G|214
5V8I|1|1A|G|215
5V8I|1|1A|A|216
5V8I|1|1A|G|217
5V8I|1|1A|A|218
5V8I|1|1A|G|219
5V8I|1|1A|G|220
5V8I|1|1A|A|221
5V8I|1|1A|A|222
5V8I|1|1A|A|223
5V8I|1|1A|G|224
*
5V8I|1|1A|C|231
5V8I|1|1A|G|232
5V8I|1|1A|A|233
5V8I|1|1A|C|234
5V8I|1|1A|U|235
*
5V8I|1|1A|A|262
5V8I|1|1A|C|263
5V8I|1|1A|C|264
5V8I|1|1A|A|265
5V8I|1|1A|G|266
*
5V8I|1|1A|C|426
5V8I|1|1A|U|427
5V8I|1|1A|A|428
5V8I|1|1A|A|429
5V8I|1|1A|G|430
5V8I|1|1A|U|431
5V8I|1|1A|A|432
5V8I|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34