J6_5V93_001

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GC*GGAAC*GGAGGAGAAAA*UGAUU*AACAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5V93|1|A|A|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|G|45
5V93|1|A|C|46
*
5V93|1|A|G|181
5V93|1|A|G|182
5V93|1|A|A|183
5V93|1|A|A|184
5V93|1|A|C|185
*
5V93|1|A|G|216
5V93|1|A|G|217
5V93|1|A|A|218
5V93|1|A|G|219
5V93|1|A|G|220
5V93|1|A|A|221
5V93|1|A|G|222
5V93|1|A|A|223
5V93|1|A|A|224
5V93|1|A|A|225
5V93|1|A|A|226
*
5V93|1|A|U|233
5V93|1|A|G|234
5V93|1|A|A|235
5V93|1|A|U|236
5V93|1|A|U|237
*
5V93|1|A|A|264
5V93|1|A|A|265
5V93|1|A|C|266
5V93|1|A|A|267
5V93|1|A|G|268
*
5V93|1|A|C|515
5V93|1|A|U|516
5V93|1|A|A|517
5V93|1|A|A|518
5V93|1|A|A|519
5V93|1|A|U|520
5V93|1|A|A|521
5V93|1|A|C|522

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34