J6_5VPO_001

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5VPO|1|RA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPO|1|RA|G|45
5VPO|1|RA|C|46
*
5VPO|1|RA|G|179
5VPO|1|RA|G|180
5VPO|1|RA|A|181
5VPO|1|RA|A|182
5VPO|1|RA|C|183
*
5VPO|1|RA|G|214
5VPO|1|RA|G|215
5VPO|1|RA|A|216
5VPO|1|RA|G|217
5VPO|1|RA|A|218
5VPO|1|RA|G|219
5VPO|1|RA|G|220
5VPO|1|RA|A|221
5VPO|1|RA|A|222
5VPO|1|RA|A|223
5VPO|1|RA|G|224
*
5VPO|1|RA|C|231
5VPO|1|RA|G|232
5VPO|1|RA|A|233
5VPO|1|RA|C|234
5VPO|1|RA|U|235
*
5VPO|1|RA|A|262
5VPO|1|RA|C|263
5VPO|1|RA|C|264
5VPO|1|RA|A|265
5VPO|1|RA|G|266
*
5VPO|1|RA|C|426
5VPO|1|RA|U|427
5VPO|1|RA|A|428
5VPO|1|RA|A|429
5VPO|1|RA|G|430
5VPO|1|RA|U|431
5VPO|1|RA|A|432
5VPO|1|RA|C|433

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34